rs4235649 chr5:34523198 G>A
- Sequence
caaagagatgtgataaaagaggaa[G/A]tgttaaggaatttgaattgagtac
- ASB in cell types
- K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia) A549 (lung carcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- SPI1_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 2.90 | -0.13 | 1.30 | -4.35 | Concordant | |||
| SMC3_HUMAN | 0.15 | 1.05 | 1.93 | n/a | n/a |
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Motif analysis
