rs4246255 chr12:105765488 G>T
- Sequence
tatgtatagtgtaatttaagtgga[G/T]attttggggtgatgcccaagagca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF2_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 2.57 | n/a | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 2.83 | -2.70 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, advanced age-related macular degeneration (geographic atrophy), hdl cholesterol change with statins, ldl cholesterol, triglycerides change with statins