rs4295 chr17:63478937 C>G

Sequence
catccactctgtgggctcctcctt[C/G]tagcagcgaggggagggcagatgt
ASB in cell types
K562 (myelogenous leukemia) HeLa S3 (cervical adenocarcinoma) GM19239 (male B-cells lymphoblastoid cell line)
ASB for transcription factors
CLOCK_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CLOCK_HUMAN -2.06 2.84 1.000.02 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI diastolic blood pressure,  systolic blood pressure
GRASP diastolic blood pressure (dbp),  height,  microalbuminuria,  systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Kidney_Cortex,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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