rs4298676 chr1:1909238 G>A
- Sequence
cgtcaaggcgggccgtgggggggg[G/A]gggggaagtgacggggcgtggccg
- ASB in cell types
- glioblastoma cells LNCaP (prostate carcinoma) GM18951 (B-cells Lymphoblastoid Cell Lines) HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.18 | 1.87 | 1.49 | n/a | No Hit | |||
| STAG1_HUMAN | 0.13 | 1.16 | 1.20 | n/a | n/a |
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