rs43111 chr7:88227200 A>G

Sequence
caataacaacagtattaaacacac[A/G]tacaggtaaatatttgacattcct
ASB in cell types
A549 (lung carcinoma) Detroit 562 (Pharyngeal squamous cell carcinoma)
ASB for transcription factors
JUN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
JUN_HUMAN 0.11 1.28 0.900.04 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP simpson-angus scale,  suicide attempts in bipolar disorder
GTEx eQTL Adipose_Subcutaneous,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis

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