rs4471 chr22:36462189 C>G

Sequence
ctccagttggtagttaacagctgt[C/G]tagcaggagtgttcttgctcccag
ASB in cell types
BEAS-2B (bronchial epithelium) HUVEC-C (HUVEC, umbilical vein endothelial cells)
ASB for transcription factors
GCR_HUMAN TF65_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN 0.11 0.91 1.001.7·10-3 1.44 n/a No Hit
TF65_HUMAN 2.35 n/a 0.031.00 2.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP abnormal involuntary movement scale chronic kidney disease ldl cholesterol
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Coronary Artery_Tibial Brain_Caudate_basal_ganglia Brain_Cortex Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Liver Lung Muscle_Skeletal Nerve_Tibial Pancreas Pituitary Skin_Sun_Exposed_Lower_leg Thyroid Whole_Blood

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