rs4553313 chr10:84328575 C>G
- Sequence
cgggactgcgcgtgcgcggtgcgc[C/G]ggccctggagggcggagtccgggc
- ASB in cell types
- 22RV1 (prostate carcinoma) SNU398 BJAB (Burkitt lymphoma)
- ASB for transcription factors
- ANDR_HUMAN SALL4_HUMAN SPT5H_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.02 | 0.26 | 2.00 | n/a | No Hit | |||
| SALL4_HUMAN | -2.34 | 2.45 | 1.00 | n/a | No Hit | |||
| SPT5H_HUMAN | 2.17 | -1.82 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood