rs4602 chr17:41528069 G>C
- Sequence
acgccgccgtagccgccgccgtag[G/C]cccccgaggaggacgaggacacaa
- ASB in cell types
- T47D (invasive ductal carcinoma) MSC (mesenchymal stem cells) HCT-116 (colon carcinoma)
- ASB for transcription factors
- SMAD2_HUMAN MED26_HUMAN CHD1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD2_HUMAN | -4.33 | 4.01 | 1.00 | n/a | No Hit | |||
| MED26_HUMAN | -1.32 | 1.94 | 1.00 | n/a | n/a | |||
| CHD1_HUMAN | -2.43 | 2.54 | 1.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid