ADASTRA v5.1.3
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rs4619453
chr17:57126840
T
>
C
Sequence
ccggggtttgtcaataaagtttta[T/C]tggaacaggcatgaccatttgttt
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
FOXA3_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN
-0.10
1.85
1.00
1.1·10
-6
1.57
n/a
No Hit
FOXA3_HUMAN
n/a
3.52
1.00
1.6·10
-3
2.00
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL
Adipose_Subcutaneous
,
Esophagus_Mucosa
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Muscle_Skeletal
,
Skin_Sun_Exposed_Lower_leg
,
Thyroid
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)