rs4645 chr6:26124406 C>T
- Sequence
gtacctggcggcggtgttagagta[C/T]ctgaccgccgagatcctggagctg
- ASB in cell types
- K562 (myelogenous leukemia) primary B-CLL cells 22RV1 (prostate carcinoma) CD14+ monocytes
- ASB for transcription factors
- ANDR_HUMAN RFOX2_HUMAN STAT1_HUMAN SMAD5_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.87 | -4.61 | 1.83 | n/a | No Hit | |||
| RFOX2_HUMAN | 2.12 | 0.45 | 2.50 | n/a | n/a | |||
| STAT1_HUMAN | 1.92 | 0.03 | 2.00 | n/a | No Hit | |||
| SMAD5_HUMAN | 2.29 | n/a | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Testis, Whole_Blood