rs4645985 chr1:15523988 G>A
- Sequence
tgaggggtttgaagccacagggaa[G/A]gctaggctcccgcacaacgcctcc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) neural cell keratinocytes
- ASB for transcription factors
- MNT_HUMAN MGAP_HUMAN SPT5H_HUMAN LMBL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 2.85 | -2.31 | 1.00 | n/a | n/a | |||
| MGAP_HUMAN | 3.52 | -3.40 | 1.00 | n/a | n/a | |||
| SPT5H_HUMAN | 3.36 | -3.35 | 1.00 | n/a | n/a | |||
| LMBL2_HUMAN | 3.23 | -3.10 | 1.00 | n/a | n/a | |||
| HDAC1_HUMAN | 2.29 | -0.09 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood