rs4652870 chr1:33382139 T>G
- Sequence
tgagttggaagaaaacataattag[T/G]aagtgtggacccatataacagctt
- ASB in cell types
- macrophages form periferal blood TALL1 (T-Acute Lymphoblastic Leukemia) MDM(monocyte derived macrophages) HepG2 (hepatoblastoma)
- ASB for transcription factors
- SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.77 | 2.64 | 1.93 | 5.01 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Prostate, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood