rs4657000 chr1:161258484 A>C
- Sequence
cacactccttccattccactcccc[A/C]ccttgccttcttcgtgtacatctc
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ZN398_HUMAN PKNX1_HUMAN TZAP_HUMAN SP2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN398_HUMAN | n/a | 3.73 | 2.00 | n/a | n/a | |||
| PKNX1_HUMAN | 1.23 | 0.04 | 1.00 | n/a | No Hit | |||
| TZAP_HUMAN | n/a | 3.06 | 2.00 | n/a | n/a | |||
| SP2_HUMAN | -1.46 | 2.50 | 2.00 | -1.44 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis