rs4660928 chr1:46420268 A>C
- Sequence
acgctcaactctaaacttactgtg[A/C]cttcctcatttgtacaatcatcac
- ASB in cell types
- K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia) TALL1 (T-Acute Lymphoblastic Leukemia)
- ASB for transcription factors
- ARI1B_HUMAN SPI1_HUMAN MIER1_HUMAN MTG16_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | 2.10 | -2.10 | 1.00 | n/a | n/a | |||
| SPI1_HUMAN | 2.67 | -0.44 | 1.29 | -4.02 | Concordant | |||
| MIER1_HUMAN | 3.16 | -2.82 | 1.00 | n/a | n/a | |||
| MTG16_HUMAN | 1.55 | -1.55 | 1.00 | n/a | n/a | |||
| CTBP1_HUMAN | 3.24 | -2.98 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 23
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood