rs4661666 chr1:15835976 C>A
- Sequence
tctgacaatgaagggaaagaattc[C/A]ccctcccctcaacattccgtcctc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) germinal center B-cells neural cell
- ASB for transcription factors
- GMEB1_HUMAN IKZF1_HUMAN CBP_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GMEB1_HUMAN | 1.90 | -1.90 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 1.70 | 0.17 | 1.08 | n/a | No Hit | |||
| CBP_HUMAN | 2.65 | 0.21 | 2.00 | n/a | n/a | |||
| IKZF2_HUMAN | 1.42 | -0.30 | 1.00 | n/a | n/a | |||
| MTG16_HUMAN | 2.27 | -2.27 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood