rs4661721 chr1:16187874 A>G

Sequence
gactcaacccacaggaatgtgggc[A/G]atgagcaggctgcgctcggaggac
ASB in cell types
K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
SMC1A_HUMAN ILF3_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMC1A_HUMAN 1.11 0.37 0.031.00 1.25 n/a n/a
ILF3_HUMAN 2.02 -0.27 0.041.00 1.25 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP acute lung injury following major trauma bipolar disorder birth weight
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Artery_Coronary Artery_Tibial Brain_Cerebellar_Hemisphere Brain_Cerebellum Breast_Mammary_Tissue Cells_Cultured_fibroblasts Cells_EBV-transformed_lymphocytes Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Liver Lung Muscle_Skeletal Nerve_Tibial Pancreas Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Spleen Stomach Testis Whole_Blood

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