rs4746970 chr10:70146394 T>C
- Sequence
gcaggaagacggcgccggccgcgg[T/C]caggacttcgctgccagctcgcag
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) MOLT-4 (Adult T acute lymphoblastic leukemia) MDA-MB-231 (breast adenocarcinoma) PC9 (lung adenocarcinoma)
- ASB for transcription factors
- HMGB1_HUMAN BRD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HMGB1_HUMAN | n/a | 2.92 | 1.00 | n/a | n/a | |||
| BRD4_HUMAN | 1.17 | -0.02 | 1.41 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood