rs4750129 chr10:11875003 G>A

Sequence
tttctctcggcatgaaagccttgt[G/A]gggggatccagccagccacagaag
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
MGAP_HUMAN RFX1_HUMAN RAD51_HUMAN EGR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MGAP_HUMAN n/a 2.47 1.001.9·10-7 2.00 n/a n/a
RFX1_HUMAN 0.07 0.89 0.873.8·10-6 2.00 n/a No Hit
RAD51_HUMAN -1.35 1.98 1.004.5·10-5 1.17 n/a n/a
EGR1_HUMAN -3.60 1.81 1.003.5·10-3 2.00 n/a No Hit
RING2_HUMAN 0.48 2.64 0.780.01 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Aorta,  Brain_Hypothalamus,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis

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