rs4766460 chr12:111397205 A>G
- Sequence
ggactgcggccaagtcccggcccc[A/G]ggagctcgcgtgccccacgttgat
- ASB in cell types
- HEK293 (embryonic kidney) MDA-MB-231 (breast adenocarcinoma) neutrophils from periferal blood MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
- ASB for transcription factors
- MBD3_HUMAN BRD2_HUMAN CDN1B_HUMAN ZN785_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MBD3_HUMAN | -1.49 | 1.49 | 1.00 | n/a | n/a | |||
| BRD2_HUMAN | -0.16 | 1.07 | 1.00 | n/a | n/a | |||
| CDN1B_HUMAN | 0.04 | 0.91 | 1.00 | n/a | n/a | |||
| ZN785_HUMAN | n/a | 2.16 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood