rs4808336 chr19:15631955 T>G
- Sequence
agcaccagggacagcggctgcacc[T/G]ggactttcccctgtctgactgtag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HCT-116 (colon carcinoma) liver GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- REST_HUMAN STAG1_HUMAN CTCF_HUMAN HNF4A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REST_HUMAN | 2.71 | 0.57 | 1.35 | n/a | No Hit | |||
| STAG1_HUMAN | 2.34 | -0.18 | 1.22 | n/a | n/a | |||
| CTCF_HUMAN | 1.13 | 1.26 | 1.35 | n/a | No Hit | |||
| HNF4A_HUMAN | 2.81 | 0.16 | 1.46 | -2.61 | Concordant | |||
| RAD21_HUMAN | 1.00 | 0.02 | 1.42 | n/a | n/a |
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Motif analysis
