rs4809 chr3:129315014 G>A
- Sequence
taggggccagtaaccatgacgacg[G/A]ccgttgccaaggccgagagccaat
- ASB in cell types
- monocytes from periferal blood GM02255 (Lymphoblastoid Cell Lines) 22RV1 (prostate carcinoma) GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- SRBP2_HUMAN STAG1_HUMAN ANDR_HUMAN RFX1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRBP2_HUMAN | 3.02 | n/a | 3.00 | n/a | No Hit | |||
| STAG1_HUMAN | 1.27 | 2.19 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 3.15 | n/a | 3.00 | n/a | No Hit | |||
| RFX1_HUMAN | 0.25 | -0.06 | 1.00 | -1.87 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Testis, Thyroid, Whole_Blood