rs4821673 chr22:37574978 A>G
- Sequence
ctcactgcaacctccacttcccag[A/G]ttcaagcaattatcctgcctcagc
- ASB in cell types
- THP-1 (acute monocytic leukemia) renal cortex
- ASB for transcription factors
- CREB1_HUMAN SPI1_HUMAN LDB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 3.25 | n/a | 1.00 | n/a | No Hit | |||
| SPI1_HUMAN | 2.92 | -0.21 | 1.67 | -0.73 | Weak Concordant | |||
| LDB1_HUMAN | 2.47 | n/a | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Vagina, Whole_Blood