rs4836845 chr9:121287678 T>C
- Sequence
gcagaatagtacacaggaagcgtg[T/C]gggctttttttttctttttttttt
- ASB in cell types
- foreskin keratinocyte BEAS-2B (bronchial epithelium) HCT-116 (colon carcinoma)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.83 | -0.43 | 1.50 | n/a | n/a | |||
| CTCF_HUMAN | 1.06 | 0.72 | 1.94 | n/a | No Hit | |||
| GCR_HUMAN | 1.34 | 0.57 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood