rs4844378 chr1:207316690 A>G
- Sequence
tgagttagaatgtaaatatgaaat[A/G]gactggttcctcagatgtgaggca
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) ZR-75-1 (invasive ductal carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN GRHL2_HUMAN ARI1A_HUMAN TLE3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.49 | 1.05 | 1.79 | n/a | No Hit | |||
| GRHL2_HUMAN | 0.38 | 0.92 | 1.56 | -0.79 | Weak Discordant | |||
| ARI1A_HUMAN | 0.09 | 1.35 | 1.43 | n/a | n/a | |||
| TLE3_HUMAN | -0.01 | 1.20 | 1.67 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Uterus, Vagina, Whole_Blood