rs4845604 chr1:151829204 G>A
- Sequence
ttcccttttcctttgttctctcct[G/A]gtttctttacagtgtttcctttca
- ASB in cell types
- CRC107 (colorectal cancer metastatic stem cells) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.94 | -1.06 | 2.00 | -1.21 | Weak Concordant |
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Motif analysis
Genetic associations
EMBL-EBI asthma, asthma (childhood onset), chronic inflammatory diseases (ankylosing spondylitis, crohns disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy), crohns disease, eczema, inflammatory bowel disease, respiratory diseases, ulcerative colitis
GRASP 2 hour glucose, hdl cholesterol change with statins, inflammatory bowel disease, triglycerides