ADASTRA v5.1.3
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You are using release
Bill Cipher
. You can switch to the latest ADASTRA version:
adastra.autosome.org
rs4880
chr6:159692840
A
>
G
Sequence
tgcctggagcccagataccccaaa[A/G]ccggagccagctgcctgctggtgc
ASB in cell types
SEM (childhood B acute lymphoblastic leukemia)
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
KMT2A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
KMT2A_HUMAN
0.51
1.53
1.00
0.04
1.12
n/a
n/a
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
parkinsons disease
,
parkinsons disease (pd)
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Adrenal_Gland
,
Artery_Aorta
,
Artery_Tibial
,
Brain_Cortex
,
Brain_Hippocampus
,
Brain_Substantia_nigra
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Lung
,
Minor_Salivary_Gland
,
Muscle_Skeletal
,
Nerve_Tibial
,
Pancreas
,
Pituitary
,
Prostate
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Spleen
,
Testis
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)