rs4908785 chr1:8849019 T>C
- Sequence
ggcagccagcccagccaggcagcg[T/C]gcagagccagcagctaggggaggc
- ASB in cell types
- adult erythroblasts GM12878 (female B-cells lymphoblastoid cell line) neutrophils from periferal blood K562 (myelogenous leukemia)
- ASB for transcription factors
- KDM6A_HUMAN ANDR_HUMAN NFIC_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM6A_HUMAN | n/a | 3.78 | 1.50 | n/a | n/a | |||
| ANDR_HUMAN | 0.06 | 2.69 | 1.83 | n/a | No Hit | |||
| NFIC_HUMAN | 1.09 | 1.15 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Whole_Blood