rs4908924 chr1:6554593 C>G
- Sequence
ccagctgccgaaaagaggggcctc[C/G]gagccgccggcgccctctgccggc
- ASB in cell types
- K562 (myelogenous leukemia) erythroid progenitors 22RV1 (prostate carcinoma) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- ZNF24_HUMAN MNT_HUMAN C2D1A_HUMAN KDM1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZNF24_HUMAN | -1.48 | 2.50 | 1.00 | n/a | n/a | |||
| MNT_HUMAN | -0.29 | 1.44 | 1.25 | n/a | n/a | |||
| C2D1A_HUMAN | -1.92 | 2.17 | 1.00 | n/a | n/a | |||
| KDM1A_HUMAN | -1.64 | 1.74 | 1.38 | n/a | n/a | |||
| VEZF1_HUMAN | -2.87 | 1.65 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood