rs4920620 chr1:17696659 A>G
- Sequence
ggtgtataaggtggtttctgttcc[A/G]ctcccctgaggaagttgtgcagga
- ASB in cell types
- MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- CTCF_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.31 | 1.13 | 1.63 | 2.08 | Concordant | |||
| IKZF1_HUMAN | -1.92 | 1.95 | 1.50 | n/a | No Hit |
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Motif analysis
