rs4927176 chr1:54888662 C>T
- Sequence
atagcctggacctgtactgtctta[C/T]acaacagctatgagctactggtat
- ASB in cell types
- HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) liver MCF7 WS8 cells
- ASB for transcription factors
- FOXA1_HUMAN HLF_HUMAN HNF4A_HUMAN SP1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.85 | 0.38 | 1.75 | n/a | No Hit | |||
| HLF_HUMAN | -3.42 | 2.35 | 1.50 | -3.20 | Discordant | |||
| HNF4A_HUMAN | 2.83 | -0.12 | 1.33 | n/a | No Hit | |||
| SP1_HUMAN | 1.76 | -1.25 | 1.25 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Testis, Whole_Blood