rs4934958 chr10:38528688 G>C
- Sequence
aaatgtaatagaagagaatggact[G/C]taatggaatggagagaaatggaat
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN CENPA_HUMAN CUX1_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.03 | 1.70 | 2.32 | n/a | No Hit | |||
| CENPA_HUMAN | 0.01 | 1.69 | 3.00 | n/a | n/a | |||
| CUX1_HUMAN | -4.17 | 4.06 | 1.00 | n/a | No Hit | |||
| GCR_HUMAN | 0.47 | 2.14 | 1.80 | n/a | No Hit | |||
| ANDR_HUMAN | 0.07 | 1.99 | 1.91 | n/a | No Hit |
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