rs4940383 chr18:48476387 A>G
- Sequence
tgcactcatacctcataacaaccc[A/G]taagtacagaggtacgaagggtta
- ASB in cell types
- 22RV1 (prostate carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.20 | 1.74 | 1.47 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP college completion, hdl cholesterol, ldl cholesterol, paternal transmission distortion, primary rhegmatogenous retinal detachment, schizophrenia, total cholesterol, transmission distortion, triglycerides, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood