rs4950356 chr1:147084476 G>A
- Sequence
ggctgaccttataatttctccggc[G/A]gcaaggacaacaaccaacgcgtta
- ASB in cell types
- HeLa-LTR-Luciferase cells GM01310 ( Transformed lymphovlasoid cell line ) HS578T (invasive ductal breast carcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- INT3_HUMAN AHR_HUMAN SMAD2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| INT3_HUMAN | 2.70 | -4.57 | 1.50 | n/a | n/a | |||
| AHR_HUMAN | 1.98 | -1.15 | 1.00 | n/a | No Hit | |||
| SMAD2_HUMAN | 1.90 | -3.22 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood