rs4975028 chr4:39637000 G>T
- Sequence
ggggcactactgtgtagtgaatac[G/T]ctctaaaatttaaggtccaaagtc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MS-1 (Small cell lung carcinoma) GM23248
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN ENL_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.41 | 1.52 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.28 | 1.76 | 1.07 | n/a | No Hit | |||
| ENL_HUMAN | 1.66 | -1.48 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Nerve_Tibial, Whole_Blood