rs4993564 chr1:11909934 C>T
- Sequence
gaagagaaactagagtaagaactt[C/T]gatgagtggcactcagttctcagg
- ASB in cell types
- K562 (myelogenous leukemia) HCT-116 (colon carcinoma) SET2 (Adult acute megakaryoblastic leukemia, Homo Sapiens) HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- MED26_HUMAN STAT1_HUMAN ELL2_HUMAN T2EB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MED26_HUMAN | 3.41 | n/a | 1.50 | n/a | n/a | |||
| STAT1_HUMAN | 4.37 | n/a | 3.00 | n/a | No Hit | |||
| ELL2_HUMAN | 3.02 | n/a | 2.33 | n/a | n/a | |||
| T2EB_HUMAN | 2.14 | n/a | 2.00 | n/a | n/a | |||
| RING2_HUMAN | 2.36 | -0.01 | 1.12 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Pancreas, Spleen, Stomach, Testis, Thyroid, Whole_Blood