rs5030889 chr10:68901328 C>T
- Sequence
tgcccccgcttcctttcacgctgt[C/T]gctgcccgtaggtggttgtggcca
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- GABPA_HUMAN IRF2_HUMAN E4F1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 1.53 | 0.48 | 1.06 | n/a | No Hit | |||
| IRF2_HUMAN | 2.69 | -2.43 | 1.00 | n/a | No Hit | |||
| E4F1_HUMAN | 2.38 | n/a | 1.00 | n/a | n/a |
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