rs5157 chr19:44943904 T>C
- Sequence
aagtcaccggccaaggcacacagc[T/C]agctacatgtggcccccgcgtgac
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) MDM(monocyte derived macrophages) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- ARI1B_HUMAN SPI1_HUMAN GCR_HUMAN MNT_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | n/a | 2.44 | 2.00 | n/a | n/a | |||
| SPI1_HUMAN | 0.72 | 1.98 | 1.57 | n/a | No Hit | |||
| GCR_HUMAN | -1.20 | 1.98 | 1.17 | n/a | No Hit | |||
| MNT_HUMAN | n/a | 1.62 | 2.00 | n/a | n/a | |||
| INT13_HUMAN | 2.41 | -1.52 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP cystatin c in serum, fasting insulin, hdl cholesterol, height, homa-b, homa-ir, total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Kidney_Cortex, Liver, Lung, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis