rs521734 chr1:109090634 C>G

Sequence
agacttagttaccacggccaagta[C/G]gaagccttcgagatagcgttcttc
ASB in cell types
HEK293 (embryonic kidney) HepG2 (hepatoblastoma) CD34+ hematopoietic stem cells
ASB for transcription factors
SP7_HUMAN ZN629_HUMAN ZEB2_HUMAN MGAP_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SP7_HUMAN n/a 2.65 1.003.3·10-4 2.00 n/a n/a
ZN629_HUMAN n/a 1.75 1.000.01 2.00 n/a n/a
ZEB2_HUMAN -0.55 1.89 1.000.03 1.33 n/a n/a
MGAP_HUMAN 0.99 -0.99 0.031.00 1.00 n/a n/a
ZBT20_HUMAN -4.65 2.55 1.000.04 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Brain_Caudate_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Liver,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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