rs527914876 chr16:527426 C>A

Sequence
tgtgacgccgctgatgcgcagacg[C/A]cgcggctgcaggccccgcccctcc
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) neural cell
ASB for transcription factors
CREB1_HUMAN SUZ12_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CREB1_HUMAN -3.81 1.34 1.002.2·10-3 4.67 n/a No Hit
SUZ12_HUMAN n/a 1.27 1.000.03 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Brain_Caudate_basal_ganglia,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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