rs529601 chr1:66286524 A>G

Sequence
attattaataaatccacattcccc[A/G]aaacaaacaagacagcatggcaaa
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 2.32 -0.25 1.2·10-61.00 1.62 -3.64 Concordant
Items per page:
1 – 1 of 1

Motif analysis

FOXA1_HUMAN Concordant
FOXA1_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  hdl cholesterol change with statins,  triglycerides
GTEx eQTL Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

Download