rs55693818 chr12:9362151 G>A

Sequence
acgtggctcttccccaggccaaac[G/A]cctgctgctttcagatttcctcac
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) GM12892 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
BHE40_HUMAN IKZF1_HUMAN NFAC3_HUMAN ATF7_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BHE40_HUMAN n/a 4.23 1.005.1·10-10 1.33 n/a No Hit
IKZF1_HUMAN -2.48 2.53 1.005.5·10-5 2.00 n/a No Hit
NFAC3_HUMAN -3.16 3.32 1.001.5·10-4 1.00 n/a No Hit
ATF7_HUMAN -3.06 3.12 1.004.0·10-4 1.00 n/a n/a
RELB_HUMAN -2.99 3.05 1.001.2·10-3 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hypothalamus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis,  Thyroid,  Whole_Blood

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