rs55710213 chr10:100359243 C>T

Sequence
cctgctgctttcctcccttatcac[C/T]tcaccctttgttctcctccagctc
ASB for transcription factors
GATA4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GATA4_HUMAN 0.30 1.54 1.000.05 1.00 0.21 Weak Concordant
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Motif analysis

GATA4_HUMAN Weak Concordant
GATA4_HUMAN pic

Genetic associations

EMBL-EBI white blood cell count (basophil)
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Whole_Blood

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