ADASTRA v5.1.3
Search
Browse
Annotate
Help
Downloads
About
rs55824610
chr12:22230353
C
>
T
Sequence
acagctatagactctgaatcctgc[C/T]ctctctggggctctgtaatacaaa
ASB in cell types
Tet21N (neuroblastoma)
ASB for transcription factors
TWST1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
Reset
hidden submit
Filter
Get TSV
Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TWST1_HUMAN
-1.81
2.39
1.00
1.3·10
-3
1.00
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GTEx eQTL
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Brain_Nucleus_accumbens_basal_ganglia
,
Esophagus_Mucosa
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
Download
Download page in JSON
Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
Please enable JavaScript to continue using this application.
Switch release
SNP set annotation with ANANASTRA
Sort
+/-100bp
log2-scale
log2(Alt/Ref motif p-value)