rs55829688 chr1:173868168 T>C
- Sequence
tttccccgcccttcctcgccattg[T/C]gggcagagacatgaccgtccacgt
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) monocytes from periferal blood
- ASB for transcription factors
- SRBP2_HUMAN RBM25_HUMAN MTA2_HUMAN USF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRBP2_HUMAN | 2.45 | 0.08 | 3.00 | -3.40 | Concordant | |||
| RBM25_HUMAN | 2.54 | n/a | 2.00 | n/a | n/a | |||
| MTA2_HUMAN | 2.06 | -1.78 | 1.00 | n/a | n/a | |||
| USF1_HUMAN | 1.56 | 0.63 | 1.08 | n/a | No Hit | |||
| CDN1B_HUMAN | 0.07 | 2.12 | 1.83 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood