rs558437954 chr4:154456389 C>T
- Sequence
gatctgagctcctttagactcagt[C/T]cctgtcctccaggaatctgcagtc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- TAL1_HUMAN NCOR1_HUMAN HDAC1_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TAL1_HUMAN | -3.82 | 3.15 | 2.40 | n/a | No Hit | |||
| NCOR1_HUMAN | n/a | 2.13 | 3.00 | n/a | n/a | |||
| HDAC1_HUMAN | n/a | 3.37 | 2.00 | n/a | n/a | |||
| IKZF1_HUMAN | n/a | 2.05 | 2.00 | n/a | No Hit | |||
| KDM1A_HUMAN | n/a | 1.94 | 2.00 | n/a | n/a |
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Motif analysis
