rs55959634 chr8:116703366 T>A
- Sequence
gcagaccgggaaagggagtctccc[T/A]ttccccgggggagttagagaagaa
- ASB in cell types
- GM02610 (Lymphoblastoid Cell Lines) GM12892 (female B-cells lymphoblastoid cell line) GM19099 (female B-cells Lymphoblastoid Cell Lines) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.26 | 1.46 | 1.48 | n/a | No Hit | |||
| STAG1_HUMAN | 0.75 | 1.22 | 1.21 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal