rs559623371 chr12:49867303 C>A
- Sequence
cctcaagcagccactggagggcag[C/A]aaagtgcttatgcaaaaatcccac
- ASB in cell types
- HeLa Kyoto (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.66 | -1.18 | 1.25 | -2.01 | Concordant | |||
| SMC3_HUMAN | 2.06 | -1.24 | 1.17 | n/a | n/a |
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Motif analysis
