rs55988144 chr3:98902108 C>T
- Sequence
ccagcttgctccttgctcctttct[C/T]ctcgctcctccgacgcacatcaga
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) A549 (lung carcinoma)
- ASB for transcription factors
- TF65_HUMAN JUN_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 2.41 | -1.18 | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | -0.01 | 1.18 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.27 | -2.27 | 1.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood