rs56088911 chr1:20678824 A>T
- Sequence
ccagtacgtgtgcaggaccagagg[A/T]gttagtctccggaaggtgctgcat
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- BHE40_HUMAN SKIL_HUMAN RELB_HUMAN NFAC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | -1.88 | 2.28 | 1.00 | n/a | No Hit | |||
| SKIL_HUMAN | -2.12 | 2.50 | 1.00 | n/a | n/a | |||
| RELB_HUMAN | -2.02 | 2.46 | 1.00 | n/a | No Hit | |||
| NFAC3_HUMAN | -1.75 | 2.14 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -2.05 | 0.80 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid