rs56100313 chr14:20342926 T>G
- Sequence
ttttttagtagagatggggggggg[T/G]ttcaccgtgttagcctggatggtc
- ASB in cell types
- HEK293 (embryonic kidney) adult erythroblasts GM12878 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- RBBP5_HUMAN ZN629_HUMAN ZBT10_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBBP5_HUMAN | 2.86 | -5.08 | 2.00 | n/a | n/a | |||
| ZN629_HUMAN | -3.93 | 2.44 | 1.50 | n/a | n/a | |||
| ZBT10_HUMAN | -3.30 | 2.24 | 1.50 | n/a | n/a | |||
| ESR1_HUMAN | -4.19 | 2.40 | 1.50 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.50 | 0.72 | 1.75 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood